src package

Subpackages

• src.array package
  • Subpackages
    • src.array.dense package
      • Submodules
      • src.array.dense.dense module
      • Module contents
    • src.array.linalg package
      • Submodules
      • src.array.linalg.eigen_decomp module
      • Module contents
    • src.array.sparse package
      • Submodules
      • src.array.sparse.csr module
      • src.array.sparse.sparse module
      • Module contents
  • Submodules
  • src.array.base module
    • BaseArray
      • BaseArray.as_array()
      • BaseArray.as_csr()
      • BaseArray.as_dense()
      • BaseArray.as_nparray()
      • BaseArray.as_type()
      • BaseArray.broadcast_to()
      • BaseArray.compress()
      • BaseArray.compress_axis()
      • BaseArray.concat()
      • BaseArray.copy()
      • BaseArray.cos()
      • BaseArray.count_nonzero()
      • BaseArray.diagonal()
      • BaseArray.dtype
      • BaseArray.exp()
      • BaseArray.expand_dims()
      • BaseArray.fill_diagonal()
      • BaseArray.format
      • BaseArray.icos()
      • BaseArray.iexp()
      • BaseArray.ilog()
      • BaseArray.is_dense
      • BaseArray.is_sparse
      • BaseArray.isin()
      • BaseArray.isqrt()
      • BaseArray.log()
      • BaseArray.max()
      • BaseArray.mean()
      • BaseArray.min()
      • BaseArray.ndim
      • BaseArray.nnz
      • BaseArray.reshape()
      • BaseArray.shape
      • BaseArray.sin()
      • BaseArray.size
      • BaseArray.sqrt()
      • BaseArray.squeeze()
      • BaseArray.stack()
      • BaseArray.sum()
      • BaseArray.values
    • unwrap()
    • unwrap_args()
    • unwrap_kwargs()
  • Module contents
    • BACKEND
    • BaseArray
      • BaseArray.as_array()
      • BaseArray.as_csr()
      • BaseArray.as_dense()
      • BaseArray.as_nparray()
      • BaseArray.as_type()
      • BaseArray.broadcast_to()
      • BaseArray.compress()
      • BaseArray.compress_axis()
      • BaseArray.concat()
      • BaseArray.copy()
      • BaseArray.cos()
      • BaseArray.count_nonzero()
      • BaseArray.diagonal()
      • BaseArray.dtype
      • BaseArray.exp()
      • BaseArray.expand_dims()
      • BaseArray.fill_diagonal()
      • BaseArray.format
      • BaseArray.icos()
      • BaseArray.iexp()
      • BaseArray.ilog()
      • BaseArray.is_dense
      • BaseArray.is_sparse
      • BaseArray.isin()
      • BaseArray.isqrt()
      • BaseArray.log()
      • BaseArray.max()
      • BaseArray.mean()
      • BaseArray.min()
      • BaseArray.ndim
      • BaseArray.nnz
      • BaseArray.reshape()
      • BaseArray.shape
      • BaseArray.sin()
      • BaseArray.size
      • BaseArray.sqrt()
      • BaseArray.squeeze()
      • BaseArray.stack()
      • BaseArray.sum()
      • BaseArray.values
    • CsrArray
      • CsrArray.as_array()
      • CsrArray.as_csr()
      • CsrArray.as_nparray()
      • CsrArray.broadcast_to()
      • CsrArray.compress()
      • CsrArray.compress_axis()
      • CsrArray.concat()
      • CsrArray.count_nonzero()
      • CsrArray.diagonal()
      • CsrArray.expand_dims()
      • CsrArray.fill_diagonal()
      • CsrArray.get_dense_index()
      • CsrArray.indices
      • CsrArray.indptr
      • CsrArray.mask_as_csr_index()
      • CsrArray.max()
      • CsrArray.mean()
      • CsrArray.min()
      • CsrArray.ncols
      • CsrArray.nrows
      • CsrArray.reshape()
      • CsrArray.shape
      • CsrArray.squeeze()
      • CsrArray.stack()
      • CsrArray.sum()
    • DenseArray
      • DenseArray.as_array()
      • DenseArray.as_csr()
      • DenseArray.as_dense()
      • DenseArray.as_nparray()
      • DenseArray.as_type()
      • DenseArray.broadcast_to()
      • DenseArray.compress()
      • DenseArray.compress_axis()
      • DenseArray.concat()
      • DenseArray.copy()
      • DenseArray.cos()
      • DenseArray.count_nonzero()
      • DenseArray.diagonal()
      • DenseArray.distance()
      • DenseArray.distance_lazy()
      • DenseArray.exp()
      • DenseArray.expand_dims()
      • DenseArray.fill_diagonal()
      • DenseArray.full()
      • DenseArray.icos()
      • DenseArray.iexp()
      • DenseArray.ilog()
      • DenseArray.isin()
      • DenseArray.isqrt()
      • DenseArray.log()
      • DenseArray.max()
      • DenseArray.mean()
      • DenseArray.min()
      • DenseArray.ones()
      • DenseArray.reshape()
      • DenseArray.shape
      • DenseArray.sin()
      • DenseArray.sqrt()
      • DenseArray.squeeze()
      • DenseArray.stack()
      • DenseArray.sum()
      • DenseArray.zeros()
    • SparseArray
      • SparseArray.as_dense()
      • SparseArray.as_type()
      • SparseArray.copy()
      • SparseArray.cos()
      • SparseArray.exp()
      • SparseArray.get_dense_index()
      • SparseArray.icos()
      • SparseArray.iexp()
      • SparseArray.ilog()
      • SparseArray.index
      • SparseArray.isin()
      • SparseArray.isqrt()
      • SparseArray.log()
      • SparseArray.shape
      • SparseArray.sin()
      • SparseArray.sparsity
      • SparseArray.sqrt()
    • Storage
      • Storage.abs()
      • Storage.add_at()
      • Storage.add_between()
      • Storage.arange()
      • Storage.as_index()
      • Storage.as_mask()
      • Storage.as_storage()
      • Storage.as_type()
      • Storage.as_values()
      • Storage.bin_count()
      • Storage.broadcast_to()
      • Storage.compress()
      • Storage.compress_axis()
      • Storage.concat()
      • Storage.copy()
      • Storage.cos()
      • Storage.count_nonzero()
      • Storage.cumsum()
      • Storage.data
      • Storage.diagonal()
      • Storage.diff()
      • Storage.distance()
      • Storage.distance_lazy()
      • Storage.dtype
      • Storage.exp()
      • Storage.expand_dims()
      • Storage.fill_diagonal()
      • Storage.flat_nonzero()
      • Storage.full()
      • Storage.iabs()
      • Storage.icos()
      • Storage.iexp()
      • Storage.ilog()
      • Storage.isin()
      • Storage.isqrt()
      • Storage.log()
      • Storage.max()
      • Storage.mean()
      • Storage.min()
      • Storage.ndim
      • Storage.ones()
      • Storage.repeat()
      • Storage.reshape()
      • Storage.segment_max()
      • Storage.segment_mean()
      • Storage.segment_min()
      • Storage.segment_sum()
      • Storage.shape
      • Storage.sin()
      • Storage.size
      • Storage.sqrt()
      • Storage.squeeze()
      • Storage.stack()
      • Storage.sum()
      • Storage.zeros()
• src.backend package
  • Submodules
  • src.backend.backend module
    • Backend
      • Backend.abs()
      • Backend.absolute_value()
      • Backend.add()
      • Backend.add_at()
      • Backend.arange()
      • Backend.as_data()
      • Backend.as_type()
      • Backend.bin_count()
      • Backend.bool_dtype
      • Backend.broadcast_to()
      • Backend.compress_axis()
      • Backend.concat()
      • Backend.copy()
      • Backend.cos()
      • Backend.count_nonzero()
      • Backend.counting_dtype
      • Backend.cumsum()
      • Backend.data_type
      • Backend.diagonal()
      • Backend.diff()
      • Backend.distance()
      • Backend.distance_lazy()
      • Backend.divide()
      • Backend.equal()
      • Backend.exp()
      • Backend.expand_dims()
      • Backend.fill_diagonal()
      • Backend.flat_nonzero()
      • Backend.floor_divide()
      • Backend.full()
      • Backend.greater()
      • Backend.greater_equal()
      • Backend.index_dtype
      • Backend.invert()
      • Backend.less()
      • Backend.less_equal()
      • Backend.log()
      • Backend.max()
      • Backend.mean()
      • Backend.min()
      • Backend.mod()
      • Backend.multiply()
      • Backend.name
      • Backend.not_equal()
      • Backend.ones()
      • Backend.power()
      • Backend.real_dtype
      • Backend.repeat()
      • Backend.reshape()
      • Backend.segment_max()
      • Backend.segment_mean()
      • Backend.segment_min()
      • Backend.segment_sum()
      • Backend.sin()
      • Backend.sqrt()
      • Backend.squeeze()
      • Backend.stack()
      • Backend.subtract()
      • Backend.sum()
      • Backend.zeros()
  • src.backend.numpy module
    • NumpyBackend
      • NumpyBackend.abs()
      • NumpyBackend.absolute_value()
      • NumpyBackend.add()
      • NumpyBackend.add_at()
      • NumpyBackend.add_between()
      • NumpyBackend.arange()
      • NumpyBackend.as_data()
      • NumpyBackend.as_type()
      • NumpyBackend.bin_count()
      • NumpyBackend.bool_dtype
      • NumpyBackend.broadcast_to()
      • NumpyBackend.compress_axis()
      • NumpyBackend.concat()
      • NumpyBackend.copy()
      • NumpyBackend.cos()
      • NumpyBackend.count_nonzero()
      • NumpyBackend.counting_dtype
      • NumpyBackend.cumsum()
      • NumpyBackend.data_type
      • NumpyBackend.diagonal()
      • NumpyBackend.diff()
      • NumpyBackend.distance()
      • NumpyBackend.distance_lazy()
      • NumpyBackend.divide()
      • NumpyBackend.equal()
      • NumpyBackend.exp()
      • NumpyBackend.expand_dims()
      • NumpyBackend.fill_diagonal()
      • NumpyBackend.flat_nonzero()
      • NumpyBackend.floor_divide()
      • NumpyBackend.full()
      • NumpyBackend.greater()
      • NumpyBackend.greater_equal()
      • NumpyBackend.index_dtype
      • NumpyBackend.invert()
      • NumpyBackend.less()
      • NumpyBackend.less_equal()
      • NumpyBackend.log()
      • NumpyBackend.max()
      • NumpyBackend.mean()
      • NumpyBackend.min()
      • NumpyBackend.mod()
      • NumpyBackend.multiply()
      • NumpyBackend.name
      • NumpyBackend.not_equal()
      • NumpyBackend.ones()
      • NumpyBackend.power()
      • NumpyBackend.real_dtype
      • NumpyBackend.repeat()
      • NumpyBackend.reshape()
      • NumpyBackend.segment_max()
      • NumpyBackend.segment_mean()
      • NumpyBackend.segment_min()
      • NumpyBackend.segment_sum()
      • NumpyBackend.sin()
      • NumpyBackend.sqrt()
      • NumpyBackend.squeeze()
      • NumpyBackend.stack()
      • NumpyBackend.subtract()
      • NumpyBackend.sum()
      • NumpyBackend.zeros()
  • Module contents
    • BACKEND
    • Backend
      • Backend.abs()
      • Backend.absolute_value()
      • Backend.add()
      • Backend.add_at()
      • Backend.arange()
      • Backend.as_data()
      • Backend.as_type()
      • Backend.bin_count()
      • Backend.bool_dtype
      • Backend.broadcast_to()
      • Backend.compress_axis()
      • Backend.concat()
      • Backend.copy()
      • Backend.cos()
      • Backend.count_nonzero()
      • Backend.counting_dtype
      • Backend.cumsum()
      • Backend.data_type
      • Backend.diagonal()
      • Backend.diff()
      • Backend.distance()
      • Backend.distance_lazy()
      • Backend.divide()
      • Backend.equal()
      • Backend.exp()
      • Backend.expand_dims()
      • Backend.fill_diagonal()
      • Backend.flat_nonzero()
      • Backend.floor_divide()
      • Backend.full()
      • Backend.greater()
      • Backend.greater_equal()
      • Backend.index_dtype
      • Backend.invert()
      • Backend.less()
      • Backend.less_equal()
      • Backend.log()
      • Backend.max()
      • Backend.mean()
      • Backend.min()
      • Backend.mod()
      • Backend.multiply()
      • Backend.name
      • Backend.not_equal()
      • Backend.ones()
      • Backend.power()
      • Backend.real_dtype
      • Backend.repeat()
      • Backend.reshape()
      • Backend.segment_max()
      • Backend.segment_mean()
      • Backend.segment_min()
      • Backend.segment_sum()
      • Backend.sin()
      • Backend.sqrt()
      • Backend.squeeze()
      • Backend.stack()
      • Backend.subtract()
      • Backend.sum()
      • Backend.zeros()
• src.data package
  • Submodules
  • src.data.load_data module
    • download_gdrive_folder()
    • load_file()
    • load_gdrive_file()
    • load_s_curve()
    • load_swiss_roll()
  • Module contents
    • download_gdrive_folder()
    • load_file()
    • load_gdrive_file()
    • load_s_curve()
    • load_swiss_roll()
• src.geometry package
  • Subpackages
    • src.geometry.density package
      • Submodules
      • src.geometry.density.density module
      • Module contents
    • src.geometry.embedding package
      • Submodules
      • src.geometry.embedding.laplacian_embedding module
      • src.geometry.embedding.ltsa module
      • Module contents
    • src.geometry.matrix package
      • Submodules
      • src.geometry.matrix.adjacency module
      • src.geometry.matrix.affinity module
      • src.geometry.matrix.distance module
      • src.geometry.matrix.laplacian module
      • Module contents
  • Submodules
  • src.geometry.normalize module
    • normalize()
  • src.geometry.points module
    • Coordinates
      • Coordinates.concat_with_metadata()
      • Coordinates.d
    • Data
      • Data.D
    • Embedding
      • Embedding.p
    • Points
      • Points.concat_with_metadata()
      • Points.demean()
      • Points.pairwise_distance()
    • PointsMixin
      • PointsMixin.fixed_dtype
      • PointsMixin.fixed_ndim
      • PointsMixin.metadata
      • PointsMixin.nfeats
      • PointsMixin.npts
  • Module contents
    • Coordinates
      • Coordinates.concat_with_metadata()
      • Coordinates.d
    • Data
      • Data.D
    • EigenSystem
      • EigenSystem.drop_first()
      • EigenSystem.get_comp()
    • Embedding
      • Embedding.p
    • Points
      • Points.concat_with_metadata()
      • Points.demean()
      • Points.pairwise_distance()
    • normalize()
• src.model package
  • Module contents
    • SpectralEmbedding
      • SpectralEmbedding.aff_mat
      • SpectralEmbedding.dist_mat
      • SpectralEmbedding.fit()
      • SpectralEmbedding.lap_mat
• src.object package
  • Submodules
  • src.object.function module
    • Coordinate
    • CoordinateMixin
    • Degree
    • DegreeMixin
    • FunctionMixin
      • FunctionMixin.concat_with_metadata()
      • FunctionMixin.fixed_dtype
      • FunctionMixin.fixed_ndim
      • FunctionMixin.metadata
      • FunctionMixin.nfuncs
      • FunctionMixin.npts
    • KNNDistance
    • KNNDistanceMixin
    • LocalDistortion
    • LocalDistortionMixin
    • NeighborCount
    • NeighborCountMixin
      • NeighborCountMixin.fixed_dtype
  • src.object.geometry_matrix_mixin module
    • GeometryMatrixMixin
      • GeometryMatrixMixin.concat_with_metadata()
      • GeometryMatrixMixin.fixed_dtype
      • GeometryMatrixMixin.fixed_ndim
      • GeometryMatrixMixin.from_npts
      • GeometryMatrixMixin.is_square
      • GeometryMatrixMixin.npts
      • GeometryMatrixMixin.to_npts
  • src.object.metadata module
    • Metadata
      • Metadata.aff_minus_id
      • Metadata.aff_type
      • Metadata.degree_type
      • Metadata.dist_type
      • Metadata.ds
      • Metadata.eps
      • Metadata.ks
      • Metadata.lap_type
      • Metadata.name
      • Metadata.radii
      • Metadata.radius
      • Metadata.update_with()
    • optional_tuple_of_floats()
    • optional_tuple_of_ints()
  • src.object.object_mixin module
    • ObjectMixin
      • ObjectMixin.concat_with_metadata()
      • ObjectMixin.fixed_dtype
      • ObjectMixin.fixed_ndim
      • ObjectMixin.metadata
    • chunk()
  • Module contents
    • Eigen
      • Eigen.concat_with_metadata()
      • Eigen.eigenvalues
      • Eigen.eigenvectors
      • Eigen.fixed_tuple_length
      • Eigen.fixed_type
      • Eigen.fixed_value_ndim
      • Eigen.fixed_vector_ndim
      • Eigen.sort_by_eigval()
    • FunctionMixin
      • FunctionMixin.concat_with_metadata()
      • FunctionMixin.fixed_dtype
      • FunctionMixin.fixed_ndim
      • FunctionMixin.metadata
      • FunctionMixin.nfuncs
      • FunctionMixin.npts
    • GeometryMatrixMixin
      • GeometryMatrixMixin.concat_with_metadata()
      • GeometryMatrixMixin.fixed_dtype
      • GeometryMatrixMixin.fixed_ndim
      • GeometryMatrixMixin.from_npts
      • GeometryMatrixMixin.is_square
      • GeometryMatrixMixin.metadata
      • GeometryMatrixMixin.npts
      • GeometryMatrixMixin.to_npts
    • Metadata
      • Metadata.aff_minus_id
      • Metadata.aff_type
      • Metadata.degree_type
      • Metadata.dist_type
      • Metadata.ds
      • Metadata.eps
      • Metadata.ks
      • Metadata.lap_type
      • Metadata.name
      • Metadata.radii
      • Metadata.radius
      • Metadata.update_with()
    • ObjectMixin
      • ObjectMixin.concat_with_metadata()
      • ObjectMixin.fixed_dtype
      • ObjectMixin.fixed_ndim
      • ObjectMixin.metadata
    • chunk()
• src.storage package
  • Submodules
  • src.storage.storage module
    • Storage
      • Storage.abs()
      • Storage.add_at()
      • Storage.add_between()
      • Storage.arange()
      • Storage.as_index()
      • Storage.as_mask()
      • Storage.as_storage()
      • Storage.as_type()
      • Storage.as_values()
      • Storage.bin_count()
      • Storage.broadcast_to()
      • Storage.compress()
      • Storage.compress_axis()
      • Storage.concat()
      • Storage.copy()
      • Storage.cos()
      • Storage.count_nonzero()
      • Storage.cumsum()
      • Storage.data
      • Storage.diagonal()
      • Storage.diff()
      • Storage.distance()
      • Storage.distance_lazy()
      • Storage.dtype
      • Storage.exp()
      • Storage.expand_dims()
      • Storage.fill_diagonal()
      • Storage.flat_nonzero()
      • Storage.full()
      • Storage.iabs()
      • Storage.icos()
      • Storage.iexp()
      • Storage.ilog()
      • Storage.isin()
      • Storage.isqrt()
      • Storage.log()
      • Storage.max()
      • Storage.mean()
      • Storage.min()
      • Storage.ndim
      • Storage.ones()
      • Storage.repeat()
      • Storage.reshape()
      • Storage.segment_max()
      • Storage.segment_mean()
      • Storage.segment_min()
      • Storage.segment_sum()
      • Storage.shape
      • Storage.sin()
      • Storage.size
      • Storage.sqrt()
      • Storage.squeeze()
      • Storage.stack()
      • Storage.sum()
      • Storage.zeros()
  • Module contents
    • BACKEND
    • Storage
      • Storage.abs()
      • Storage.add_at()
      • Storage.add_between()
      • Storage.arange()
      • Storage.as_index()
      • Storage.as_mask()
      • Storage.as_storage()
      • Storage.as_type()
      • Storage.as_values()
      • Storage.bin_count()
      • Storage.broadcast_to()
      • Storage.compress()
      • Storage.compress_axis()
      • Storage.concat()
      • Storage.copy()
      • Storage.cos()
      • Storage.count_nonzero()
      • Storage.cumsum()
      • Storage.data
      • Storage.diagonal()
      • Storage.diff()
      • Storage.distance()
      • Storage.distance_lazy()
      • Storage.dtype
      • Storage.exp()
      • Storage.expand_dims()
      • Storage.fill_diagonal()
      • Storage.flat_nonzero()
      • Storage.full()
      • Storage.iabs()
      • Storage.icos()
      • Storage.iexp()
      • Storage.ilog()
      • Storage.isin()
      • Storage.isqrt()
      • Storage.log()
      • Storage.max()
      • Storage.mean()
      • Storage.min()
      • Storage.ndim
      • Storage.ones()
      • Storage.repeat()
      • Storage.reshape()
      • Storage.segment_max()
      • Storage.segment_mean()
      • Storage.segment_min()
      • Storage.segment_sum()
      • Storage.shape
      • Storage.sin()
      • Storage.size
      • Storage.sqrt()
      • Storage.squeeze()
      • Storage.stack()
      • Storage.sum()
      • Storage.zeros()

Module contents